Executive Order No. 151 (September 1999): Established the Farmers Trust Development Program to promote voluntary consolidation of small-scale agricultural landholdings into medium and large-scale farm enterprises through a usufruct trust arrangement.

Executive Order No. 295 (September 28, 2000): Formally placed various Task Forces against organized crimes under the Presidential Anti-Organized Crime Commission, aiming to minimize organized and syndicated crimes.

Executive Order No. 322: Required all national government agencies, instrumentalities, and government-owned or controlled corporations to participate in the Electronic Procurement System to ensure transparency and efficiency in government procurement.

Executive Order No. 165 (1999): Focused on institutional strengthening and streamlining the Executive Branch, outlining objectives such as defining the role of government intervention, delineating sectoral activities, and improving service delivery systems.

Executive Order No. 273: Institutionalized the system of national coordination, assessment, planning, and monitoring of the entire educational system.

Executive Order No. 141: Prohibited the forgery and unauthorized use of the seal of the President of the Philippines.

Executive Order No. 44: Focused on the National Sports Development Program for Children.

Executive Order No. 264: Established the Information and Communications Technology (ICT) Development Council to provide policy and institutional environment for the long-term use of ICT in achieving national goals.

Executive Order No. 290: Streamlined the structure of the Office of the President.

Executive Order No. 159: Declared mass housing as a centerpiece program of the Estrada administration.

Executive Order No. 46: Focused on the development of the University of the Philippines and other areas of concern in education.