Executive Order No. 1 (2001) : Creation of the Fact-Finding Commission to investigate the alleged anomalies of former President Joseph Estrada.

Executive Order No. 2 (2001) : Reorganization of the Department of Transportation and Communications (DOTC).

Executive Order No. 3 (2001) : Directing the implementation of the "Expanded Government Internship Program.

Executive Order No. 5 (2001) : Reorganization of the Department of Agrarian Reform (DAR).

Executive Order No. 9 (2001) : Declaring a moratorium on the suspension of mining operations in certain areas.

Executive Order No. 10 (2001) : Creation of a Presidential Anti-Organized Crime Commission.

Executive Order No. 13 (2001): Adopting a National Framework on Disaster Risk Reduction.

Executive Order No. 14 (2001) :Reorganizing the Department of Trade and Industry (DTI).

Executive Order No. 22 (2002) : Creating the National Anti-Poverty Commission (NAPC).

Executive Order No. 35 (2002) : Directing the Department of Finance (DOF) to institute reforms on the tax system.

Executive Order No. 44 (2002) :Establishment of the National Economic and Development Authority (NEDA) Policy Support Office.

Executive Order No. 46 (2002) :Strengthening the role of local government units (LGUs) in the implementation of the National Anti-Drug Campaign.

Executive Order No. 47 (2002) : Creation of the Commission on the Disbursement of Tobacco Excise Tax.

Executive Order No. 53 (2003) : Defining the administration’s policy in the management and operation of government-owned and -controlled corporations (GOCCs).

Executive Order No. 64 (2003):Streamlining the processes in government transactions.

Executive Order No. 101 (2004) : Establishing the Philippine National Police (PNP) Anti-Crime Task Force.

Executive Order No. 144 (2005) : Organizing and strengthening the National Intelligence Coordinating Agency (NICA).

Executive Order No. 180 (2007) : Directing the Bureau of Internal Revenue (BIR) to collect a minimum tax on businesses and professionals.

Executive Order No. 366 (2004) : Reorganizing the National Economic and Development Authority (NEDA).

Executive Order No. 460 (2005) : Establishment of the National Security Council (NSC) Policy Support Office.

Executive Order No. 573 (2006) : Amending EO No. 127 concerning policies on certain investments.

Executive Order No. 611 (2007) :Reaffirming the government's commitment to achieving the United Nations Millennium Development Goals (MDGs).

Executive Order No. 716 (2008) : Rationalizing the government’s use of mobile phones for more efficient service delivery.